Computer model reveals effect of increased cholesterol on specific ion channel in heart

Ion channels are proteins located within a cell membrane that control the transport of ions between a cell's surrounding environment and the interior of the cell. The electrical current that allows the heart muscle to contract is a product of a series of ion transfers across the cell membrane. Every cardiac cell has ion channels in the membrane that transport a specific charged atom — such as calcium, sodium, or potassium — from the external environment into the heart cell.

Belinda Akpa, assistant professor of integrated synthetic and systems biology and electrical and computer engineering at NC State and co-corresponding author of a paper describing the research, looked at the effect of cholesterol molecules on a particular ion channel, called Kir2, which regulates the transfer of potassium into cardiac cells.

"Cholesterol isn't in and of itself a bad thing," Akpa says. "It's always present in the cell membrane. When the levels of cholesterol change we start to have problems. Given that cholesterol is something like 30 per cent of a normal membrane, we wanted to understand why a relatively small increase — going from about 30 to 40 per cent — suddenly makes things go wrong."

Akpa, University of Chicago at Illinois Ph.D. student Nicolas Barbera, and co-corresponding author Irena Levitan, professor of medicine, pharmacology, and bioengineering at the University of Illinois at Chicago, used computer modeling to reveal the ways in which cholesterol molecules interact with the Kir2 ion channel. They found that while individual cholesterol molecules don't bind strongly to the Kir2 channel, increasing the levels of cholesterol made these interactions more numerous, essentially overwhelming the channel.

Proteins and small molecules often interact like locks and keys, where only a specific molecule can fit into a particular region on the protein. These interactions cause the protein to change shape — in the case of Kir2, cholesterol sliding into these regions interferes with the protein's attempts to open or close to allow potassium ions into a cardiac cell. In their model, Akpa, Barbera and Levitan identified four "locks" on the Kir2 ion channel that cholesterol molecules attempted to occupy.

"Cholesterol may actually belong in some of these locks, but we're also seeing it try to move into places that should probably be unoccupied, which interferes with the ability of the protein to change its shape in a way that allows it to open and close normally," says Akpa. "This is a problem because cells require ion channels to orchestrate a sophisticated choreography of ions moving in and out at different times. Essentially, it's like taking a symphony of ion exchanges and inserting a wrong note."

Future work for the team will focus specifically on how additional cholesterol changes the ability of the protein to open and close.